1 Hpt#1
5-98 aa · 94 aa · 13.8% of protein
Raw token
Hpt:5:3.43e-18:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS08915
Histidine kinase, CheA
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeCheALength683 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS08915Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length683 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage425 / 683 aa (62.2%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa683 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
302-364 aa · 63 aa · 9.2% of protein
Raw token
H-kinase_dim:302:0.00000000000000941:364:67:673 HATPase_c#3
412-551 aa · 140 aa · 20.5% of protein
Raw token
HATPase_c:412:0.0000000000000134:551:140:1094 CheW#4
556-683 aa · 128 aa · 18.7% of protein
Raw token
CheW:556:7.63e-33:683:135:138- Raw architecture: Hpt:5:3.43e-18:98:94:84#H-kinase_dim:302:0.00000000000000941:364:67:67#HATPase_c:412:0.0000000000000134:551:140:109#CheW:556:7.63e-33:683:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span528275-531436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01855RefSeq proteinWP_005603703.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00007Context members
BUTYVIB_RS08915BUTYVIB_RS08920
Partner locus tags
BUTYVIB_RS08915BUTYVIB_RS08920
Partner old locus tags
BUTYVIB_01855BUTYVIB_01856
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005603703.1Primary protein accession used for annex mappings.
UniProt accessionD4S185Primary UniProt accession resolved in the annex database.
UniProt IDD4S185_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS08915Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval528 275-530 326 nt2 052 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span528 275-531 436 ntGCF_000156015::NZ_GG663524.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span528 275-531 436 nt3 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
528 275 nt531 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS08915GCF_000156015#BUTYVIB_RS08915
HKCheACurrent focus
528 275-530 326 nt · Reverse (-)
BUTYVIB_RS08920GCF_000156015#BUTYVIB_RS08920
RRCheB
530 327-531 436 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS08915The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0808328
Simplified PFAM architecture for HKOC_0808328
PFAM domain coverage: 503 / 683 aa (73.6%)
1 aa683 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-98] | P2[177-254] | H-kinase_dim[302-364] | HATPase_c[412-551] | CheW[556-683]
- Domain count: 5
- Matched identifier: HKOC_0808328
- Positioned domains: Hpt 5-98 ; P2 177-254 ; H-kinase_dim 302-364 ; HATPase_c 412-551 ; CheW 556-683
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS08915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key