1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:4.56e-27:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS08535
Response regulator OmpR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS08535Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:5.09e-23:214:78:77- Raw architecture: Response_reg:3:4.56e-27:111:111:111#Trans_reg_C:142:5.09e-23:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span453118-455081Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01775RefSeq proteinWP_005603572.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00006Context members
BUTYVIB_RS08530BUTYVIB_RS08535
Partner locus tags
BUTYVIB_RS08530BUTYVIB_RS08535
Partner old locus tags
BUTYVIB_01774BUTYVIB_01775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005603572.1Primary protein accession used for annex mappings.
UniProt accessionD4S105Primary UniProt accession resolved in the annex database.
UniProt IDD4S105_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS08535Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval454 428-455 081 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span453 118-455 081 ntGCF_000156015::NZ_GG663524.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span453 118-455 081 nt1 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
453 118 nt455 081 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS08530GCF_000156015#BUTYVIB_RS08530
HKClassic
453 118-454 431 nt · Reverse (-)
BUTYVIB_RS08535GCF_000156015#BUTYVIB_RS08535
RROmpRCurrent focus
454 428-455 081 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS08535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847681
Simplified PFAM architecture for RROC_1847681
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1847681
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS08535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key