1 CheW#1
15-151 aa · 137 aa · 45.4% of protein
Raw token
CheW:15:2.79e-30:151:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS06630
Response regulator CheV family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS06630Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage260 / 302 aa (86.1%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
175-297 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:175:0.00000000000693:297:124:111- Raw architecture: CheW:15:2.79e-30:151:137:138#Response_reg:175:0.00000000000693:297:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663524.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span64094-65002Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01380RefSeq proteinWP_040332005.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00004Context members
BUTYVIB_RS06630
Partner locus tags
BUTYVIB_RS06630
Partner old locus tags
BUTYVIB_01380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040332005.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS06630Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval64 094-65 002 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 094-65 002 ntGCF_000156015::NZ_GG663524.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span64 094-65 002 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 094 nt65 002 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS06630GCF_000156015#BUTYVIB_RS06630
RRCheVCurrent focus
64 094-65 002 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS06630The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568533
Simplified PFAM architecture for RROC_0568533
PFAM domain coverage: 255 / 302 aa (84.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-150] | Response_reg[175-293]
- Domain count: 2
- Matched identifier: RROC_0568533
- Positioned domains: CheW 15-150 ; CheW 15-150 ; Response_reg 175-293 ; Response_reg 175-293
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS06630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key