1 Response_reg#1
3-109 aa · 107 aa · 44.0% of protein
Raw token
Response_reg:3:0.000000000000529:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS05420
Response regulator LytTR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS05420Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 243 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-233 aa · 96 aa · 39.5% of protein
Raw token
LytTR:138:0.00000000261:233:102:98- Raw architecture: Response_reg:3:0.000000000000529:109:109:111#LytTR:138:0.00000000261:233:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663522.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span213197-213928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01123RefSeq proteinWP_040331897.1
Context group ID
GCF_000156015::NZ_GG663522.1::G00021Context members
BUTYVIB_RS05420
Partner locus tags
BUTYVIB_RS05420
Partner old locus tags
BUTYVIB_01123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040331897.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS05420Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01123Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663522.1Sequence record reported by the local genomic context database.
Genomic interval213 197-213 928 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 197-213 928 ntGCF_000156015::NZ_GG663522.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663522.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663522.1All displayed genes belong to this local TCS context.
Neighborhood span213 197-213 928 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 197 nt213 928 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS05420GCF_000156015#BUTYVIB_RS05420
RRLytTRCurrent focus
213 197-213 928 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS05420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824811
Simplified PFAM architecture for RROC_0824811
PFAM domain coverage: 203 / 243 aa (83.5%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[141-233]
- Domain count: 2
- Matched identifier: RROC_0824811
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 141-233 ; LytTR 141-233
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS05420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key