1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:5.77e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS04075
Response regulator OmpR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS04075Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:6.61e-31:227:77:77- Raw architecture: Response_reg:4:5.77e-34:113:111:111#Trans_reg_C:151:6.61e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663521.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101222-103385Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00838RefSeq proteinWP_005601977.1
Context group ID
GCF_000156015::NZ_GG663521.1::G00024Context members
BUTYVIB_RS04075BUTYVIB_RS04080
Partner locus tags
BUTYVIB_RS04075BUTYVIB_RS04080
Partner old locus tags
BUTYVIB_00838BUTYVIB_00839
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005601977.1Primary protein accession used for annex mappings.
UniProt accessionD4RYD3Primary UniProt accession resolved in the annex database.
UniProt IDD4RYD3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS04075Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00838Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663521.1Sequence record reported by the local genomic context database.
Genomic interval101 222-101 911 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 222-103 385 ntGCF_000156015::NZ_GG663521.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663521.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663521.1All displayed genes belong to this local TCS context.
Neighborhood span101 222-103 385 nt2 164 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 222 nt103 385 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS04075GCF_000156015#BUTYVIB_RS04075
RROmpRCurrent focus
101 222-101 911 nt · Reverse (-)
BUTYVIB_RS04080GCF_000156015#BUTYVIB_RS04080
HKClassic
101 883-103 385 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS04075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246784
Simplified PFAM architecture for RROC_1246784
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1246784
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS04075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key