1 Response_reg#1
52-110 aa · 59 aa · 24.9% of protein
Raw token
Response_reg:52:0.000000701:110:61:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS03735
Response regulator LytTR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS03735Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 237 aa (61.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-225 aa · 87 aa · 36.7% of protein
Raw token
LytTR:139:5.37e-20:225:92:98- Raw architecture: Response_reg:52:0.000000701:110:61:111#LytTR:139:5.37e-20:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663521.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span32161-32874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00768RefSeq proteinWP_005601855.1
Context group ID
GCF_000156015::NZ_GG663521.1::G00023Context members
BUTYVIB_RS03735
Partner locus tags
BUTYVIB_RS03735
Partner old locus tags
BUTYVIB_00768
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005601855.1Primary protein accession used for annex mappings.
UniProt accessionD4RY64Primary UniProt accession resolved in the annex database.
UniProt IDD4RY64_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS03735Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00768Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663521.1Sequence record reported by the local genomic context database.
Genomic interval32 161-32 874 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 161-32 874 ntGCF_000156015::NZ_GG663521.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663521.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663521.1All displayed genes belong to this local TCS context.
Neighborhood span32 161-32 874 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 161 nt32 874 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS03735GCF_000156015#BUTYVIB_RS03735
RRLytTRCurrent focus
32 161-32 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS03735The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0961611
Simplified PFAM architecture for RROC_0961611
PFAM domain coverage: 87 / 237 aa (36.7%)
1 aa237 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[139-225]
- Domain count: 1
- Matched identifier: RROC_0961611
- Positioned domains: LytTR 139-225 ; LytTR 139-225
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS03735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key