1 Response_reg#1
4-116 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:4:9.48e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS01125
Response regulator, unclassified
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS01125Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 504 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-451 aa · 40 aa · 7.9% of protein
Raw token
HTH_AraC:412:0.000000751:451:40:423 HTH_AraC#3
468-501 aa · 34 aa · 6.7% of protein
Raw token
HTH_AraC:468:0.000000317:501:34:42- Raw architecture: Response_reg:4:9.48e-26:116:113:111#HTH_AraC:412:0.000000751:451:40:42#HTH_AraC:468:0.000000317:501:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663519.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191536-194759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00231RefSeq proteinWP_040331520.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00032Context members
BUTYVIB_RS01120BUTYVIB_RS01125
Partner locus tags
BUTYVIB_RS01120BUTYVIB_RS01125
Partner old locus tags
BUTYVIB_00230BUTYVIB_00231
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040331520.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS01125Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00231Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval193 245-194 759 nt1 515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191 536-194 759 ntGCF_000156015::NZ_GG663519.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span191 536-194 759 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 536 nt194 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS01120GCF_000156015#BUTYVIB_RS01120
HKClassic
191 536-193 242 nt · Reverse (-)
BUTYVIB_RS01125GCF_000156015#BUTYVIB_RS01125
RRunclassifiedCurrent focus
193 245-194 759 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS01125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153671
Simplified PFAM architecture for RROC_0153671
PFAM domain coverage: 191 / 504 aa (37.9%)
1 aa504 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[423-501]
- Domain count: 2
- Matched identifier: RROC_0153671
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 423-501 ; HTH_18 423-501
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS01125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key