1 Response_reg#1
8-119 aa · 112 aa · 42.9% of protein
Raw token
Response_reg:8:3.84e-21:119:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS00620
Response regulator Spo0A family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeSpo0ALength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS00620Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage216 / 261 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
151-254 aa · 104 aa · 39.8% of protein
Raw token
Spo0A_C:151:3.06e-63:254:104:104- Raw architecture: Response_reg:8:3.84e-21:119:112:111#Spo0A_C:151:3.06e-63:254:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663519.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98754-99539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00127RefSeq proteinWP_021960896.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00031Context members
BUTYVIB_RS00620
Partner locus tags
BUTYVIB_RS00620
Partner old locus tags
BUTYVIB_00127
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021960896.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS00620Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00127Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval98 754-99 539 nt786 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 754-99 539 ntGCF_000156015::NZ_GG663519.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span98 754-99 539 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 754 nt99 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS00620GCF_000156015#BUTYVIB_RS00620
RRSpo0ACurrent focus
98 754-99 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS00620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648442
Simplified PFAM architecture for RROC_0648442
PFAM domain coverage: 217 / 261 aa (83.1%)
1 aa261 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[8-120] | Spo0A_C[151-254]
- Domain count: 2
- Matched identifier: RROC_0648442
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; Spo0A_C 151-254 ; Spo0A_C 151-254
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key