1 HAMP#1
174-241 aa · 68 aa · 14.0% of protein
Raw token
HAMP:174:0.00000000000000902:241:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS00120
Histidine kinase, Classic
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS00120Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 486 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-333 aa · 68 aa · 14.0% of protein
Raw token
HisKA:266:0.00000000000000166:333:68:643 HATPase_c#3
379-484 aa · 106 aa · 21.8% of protein
Raw token
HATPase_c:379:2.7e-18:484:108:109- Raw architecture: HAMP:174:0.00000000000000902:241:68:69#HisKA:266:0.00000000000000166:333:68:64#HATPase_c:379:2.7e-18:484:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663519.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1196-2656Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00026RefSeq proteinWP_005600540.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00028Context members
BUTYVIB_RS00120
Partner locus tags
BUTYVIB_RS00120
Partner old locus tags
BUTYVIB_00026
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005600540.1Primary protein accession used for annex mappings.
UniProt accessionD4RWJ0Primary UniProt accession resolved in the annex database.
UniProt IDD4RWJ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS00120Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00026Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval1 196-2 656 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 196-2 656 ntGCF_000156015::NZ_GG663519.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span1 196-2 656 nt1 461 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 196 nt2 656 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS00120GCF_000156015#BUTYVIB_RS00120
HKClassicCurrent focus
1 196-2 656 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS00120The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1567154
Simplified PFAM architecture for HKOC_1567154
PFAM domain coverage: 210 / 486 aa (43.2%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-240] | HisKA[267-333] | HATPase_c[379-470]
- Domain count: 3
- Matched identifier: HKOC_1567154
- Positioned domains: HAMP 190-240 ; HisKA 267-333 ; HATPase_c 379-470
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS00120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key