1 HisKA#1
32-68 aa · 37 aa · 15.0% of protein
Raw token
HisKA:32:0.00000116:68:37:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS00640
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155205#RUMLAC_RS00640Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 247 aa (57.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
141-246 aa · 106 aa · 42.9% of protein
Raw token
HATPase_c:141:2.88e-31:246:109:109- Raw architecture: HisKA:32:0.00000116:68:37:64#HATPase_c:141:2.88e-31:246:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155205::NZ_DS990163.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span122596-123339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_01017RefSeq proteinWP_005608499.1
Context group ID
GCF_000155205::NZ_DS990163.1::G00024Context members
RUMLAC_RS00640
Partner locus tags
RUMLAC_RS00640
Partner old locus tags
RUMLAC_01017
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005608499.1Primary protein accession used for annex mappings.
UniProt accessionB5CNI1Primary UniProt accession resolved in the annex database.
UniProt IDB5CNI1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS00640Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_01017Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990163.1Sequence record reported by the local genomic context database.
Genomic interval122 596-123 339 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 596-123 339 ntGCF_000155205::NZ_DS990163.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990163.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990163.1All displayed genes belong to this local TCS context.
Neighborhood span122 596-123 339 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 596 nt123 339 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RUMLAC_RS00640GCF_000155205#RUMLAC_RS00640
HKClassicCurrent focus
122 596-123 339 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS00640The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2920161
Simplified PFAM architecture for HKOC_2920161
PFAM domain coverage: 106 / 247 aa (42.9%)
1 aa247 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[141-246]
- Domain count: 1
- Matched identifier: HKOC_2920161
- Positioned domains: HATPase_c 141-246
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key