1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:6.35e-23:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS14685
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154485#CLORAM_RS14685Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.74e-22:220:75:77- Raw architecture: Response_reg:3:6.35e-23:112:111:111#Trans_reg_C:146:1.74e-22:220:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154485::NZ_DS499660.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span63902-64573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_03092RefSeq proteinWP_003539430.1
Context group ID
GCF_000154485::NZ_DS499660.1::G00001Context members
CLORAM_RS14685
Partner locus tags
CLORAM_RS14685
Partner old locus tags
CLORAM_03092
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539430.1Primary protein accession used for annex mappings.
UniProt accessionB0N8W1Primary UniProt accession resolved in the annex database.
UniProt IDB0N8W1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS14685Primary locus identifier stored in the genes table.
Old locus tagCLORAM_03092Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499660.1Sequence record reported by the local genomic context database.
Genomic interval63 902-64 573 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 902-64 573 ntGCF_000154485::NZ_DS499660.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499660.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499660.1All displayed genes belong to this local TCS context.
Neighborhood span63 902-64 573 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 902 nt64 573 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLORAM_RS14685GCF_000154485#CLORAM_RS14685
RROmpRCurrent focus
63 902-64 573 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS14685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587352
Simplified PFAM architecture for RROC_1587352
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1587352
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS14685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key