1 HAMP#1
62-131 aa · 70 aa · 20.0% of protein
Raw token
HAMP:62:0.000000246:131:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS14250
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS14250Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 350 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation3 items
2 HisKA#2
135-198 aa · 64 aa · 18.3% of protein
Raw token
HisKA:135:0.00000000000131:198:64:643 HATPase_c#3
244-345 aa · 102 aa · 29.1% of protein
Raw token
HATPase_c:244:1.04e-19:345:104:109- Raw architecture: HAMP:62:0.000000246:131:70:69#HisKA:135:0.00000000000131:198:64:64#HATPase_c:244:1.04e-19:345:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499659.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span941740-943442Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02989RefSeq proteinWP_003539229.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00007Context members
CLORAM_RS14250CLORAM_RS14255
Partner locus tags
CLORAM_RS14250CLORAM_RS14255
Partner old locus tags
CLORAM_02989CLORAM_02990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539229.1Primary protein accession used for annex mappings.
UniProt accessionB0N5Y4Primary UniProt accession resolved in the annex database.
UniProt IDB0N5Y4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS14250Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02989Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval941 740-942 792 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span941 740-943 442 ntGCF_000154485::NZ_DS499659.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span941 740-943 442 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
941 740 nt943 442 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS14250GCF_000154485#CLORAM_RS14250
HKClassicCurrent focus
941 740-942 792 nt · Reverse (-)
CLORAM_RS14255GCF_000154485#CLORAM_RS14255
RROmpR
942 789-943 442 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS14250The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2796951
Simplified PFAM architecture for HKOC_2796951
PFAM domain coverage: 167 / 350 aa (47.7%)
1 aa350 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[135-198] | HATPase_c[245-347]
- Domain count: 2
- Matched identifier: HKOC_2796951
- Positioned domains: HisKA 135-198 ; HATPase_c 245-347
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS14250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key