1 Response_reg#1
5-99 aa · 95 aa · 41.9% of protein
Raw token
Response_reg:5:0.000000000000292:99:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS14205
Response regulator LytTR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154485#CLORAM_RS14205Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 227 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-222 aa · 86 aa · 37.9% of protein
Raw token
LytTR:137:0.00000000000000895:222:92:98- Raw architecture: Response_reg:5:0.000000000000292:99:101:111#LytTR:137:0.00000000000000895:222:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154485::NZ_DS499659.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span931297-931980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02978RefSeq proteinWP_003539209.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00006Context members
CLORAM_RS14205
Partner locus tags
CLORAM_RS14205
Partner old locus tags
CLORAM_02978
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539209.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q3A583Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q3A583_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS14205Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02978Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval931 297-931 980 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span931 297-931 980 ntGCF_000154485::NZ_DS499659.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span931 297-931 980 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
931 297 nt931 980 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLORAM_RS14205GCF_000154485#CLORAM_RS14205
RRLytTRCurrent focus
931 297-931 980 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS14205The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354480
Simplified PFAM architecture for RROC_1354480
PFAM domain coverage: 194 / 227 aa (85.5%)
1 aa227 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-107] | LytTR[131-221]
- Domain count: 2
- Matched identifier: RROC_1354480
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; LytTR 131-221 ; LytTR 131-221
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS14205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key