1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:2.28e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS12620
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS12620Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:2.57e-22:221:77:77- Raw architecture: Response_reg:4:2.28e-35:112:111:111#Trans_reg_C:146:2.57e-22:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499659.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span608375-610227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02638RefSeq proteinWP_003538593.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00004Context members
CLORAM_RS12615CLORAM_RS12620
Partner locus tags
CLORAM_RS12615CLORAM_RS12620
Partner old locus tags
CLORAM_02637CLORAM_02638
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003538593.1Primary protein accession used for annex mappings.
UniProt accessionB0N7Q5Primary UniProt accession resolved in the annex database.
UniProt IDB0N7Q5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS12620Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02638Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval609 556-610 227 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span608 375-610 227 ntGCF_000154485::NZ_DS499659.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span608 375-610 227 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
608 375 nt610 227 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS12615GCF_000154485#CLORAM_RS12615
HKClassic
608 375-609 568 nt · Reverse (-)
CLORAM_RS12620GCF_000154485#CLORAM_RS12620
RROmpRCurrent focus
609 556-610 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS12620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587354
Simplified PFAM architecture for RROC_1587354
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1587354
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS12620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key