1 sCache_like#1
76-139 aa · 64 aa · 11.3% of protein
Raw token
sCache_like:76:0.000000183:139:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS07815
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS07815Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_8HisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage274 / 565 aa (48.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation4 items
2 PAS_8#2
242-275 aa · 34 aa · 6.0% of protein
Raw token
PAS_8:242:0.0000269:275:34:653 HisKA#3
339-405 aa · 67 aa · 11.9% of protein
Raw token
HisKA:339:4.93e-19:405:67:644 HATPase_c#4
454-562 aa · 109 aa · 19.3% of protein
Raw token
HATPase_c:454:6.15e-30:562:109:109- Raw architecture: sCache_like:76:0.000000183:139:70:114#PAS_8:242:0.0000269:275:34:65#HisKA:339:4.93e-19:405:67:64#HATPase_c:454:6.15e-30:562:109:109
- Domain description: 1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499656.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span196023-198390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_01614RefSeq proteinWP_003537102.1
Context group ID
GCF_000154485::NZ_DS499656.1::G00011Context members
CLORAM_RS07810CLORAM_RS07815
Partner locus tags
CLORAM_RS07810CLORAM_RS07815
Partner old locus tags
CLORAM_01613CLORAM_01614
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003537102.1Primary protein accession used for annex mappings.
UniProt accessionB0N4R3Primary UniProt accession resolved in the annex database.
UniProt IDB0N4R3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS07815Primary locus identifier stored in the genes table.
Old locus tagCLORAM_01614Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499656.1Sequence record reported by the local genomic context database.
Genomic interval196 693-198 390 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span196 023-198 390 ntGCF_000154485::NZ_DS499656.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499656.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499656.1All displayed genes belong to this local TCS context.
Neighborhood span196 023-198 390 nt2 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 023 nt198 390 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS07810GCF_000154485#CLORAM_RS07810
RROmpR
196 023-196 706 nt · Forward (+)
CLORAM_RS07815GCF_000154485#CLORAM_RS07815
HKClassicCurrent focus
196 693-198 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1234061
Simplified PFAM architecture for HKOC_1234061
PFAM domain coverage: 176 / 565 aa (31.2%)
1 aa565 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[339-405] | HATPase_c[453-561]
- Domain count: 2
- Matched identifier: HKOC_1234061
- Positioned domains: HisKA 339-405 ; HATPase_c 453-561
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key