1 HisKA#1
259-326 aa · 68 aa · 14.0% of protein
Raw token
HisKA:259:0.00000000000588:326:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS03445
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_000154485#CLORAM_RS03445Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 486 aa (37.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
371-482 aa · 112 aa · 23.0% of protein
Raw token
HATPase_c:371:1.63e-28:482:112:109- Raw architecture: HisKA:259:0.00000000000588:326:68:64#HATPase_c:371:1.63e-28:482:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_000154485::NZ_DS499654.1::G00024
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span430423-435997Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00712RefSeq proteinWP_003535602.1
Context group ID
GCF_000154485::NZ_DS499654.1::G00024Context members
CLORAM_RS03435CLORAM_RS03440CLORAM_RS03445CLORAM_RS03450
Partner locus tags
CLORAM_RS03435CLORAM_RS03440CLORAM_RS03445CLORAM_RS03450
Partner old locus tags
CLORAM_00710CLORAM_00711CLORAM_00712CLORAM_00713
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535602.1Primary protein accession used for annex mappings.
UniProt accessionB0N276Primary UniProt accession resolved in the annex database.
UniProt IDB0N276_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS03445Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00712Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499654.1Sequence record reported by the local genomic context database.
Genomic interval433 861-435 321 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span430 423-435 997 ntGCF_000154485::NZ_DS499654.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499654.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499654.1All displayed genes belong to this local TCS context.
Neighborhood span430 423-435 997 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
430 423 nt435 997 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
CLORAM_RS03435GCF_000154485#CLORAM_RS03435
HKClassic
430 423-433 113 nt · Forward (+)
CLORAM_RS03440GCF_000154485#CLORAM_RS03440
RROmpR
433 106-433 816 nt · Forward (+)
CLORAM_RS03445GCF_000154485#CLORAM_RS03445
HKClassicCurrent focus
433 861-435 321 nt · Forward (+)
CLORAM_RS03450GCF_000154485#CLORAM_RS03450
RROmpR
435 314-435 997 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03445The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1567147
Simplified PFAM architecture for HKOC_1567147
PFAM domain coverage: 282 / 486 aa (58.0%)
1 aa486 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[13-115] | HisKA[259-326] | HATPase_c[371-481]
- Domain count: 3
- Matched identifier: HKOC_1567147
- Positioned domains: DUF4118 13-115 ; HisKA 259-326 ; HATPase_c 371-481
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key