1 Response_reg#1
5-107 aa · 103 aa · 44.4% of protein
Raw token
Response_reg:5:0.000000000373:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS03315
Response regulator LytTR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154485#CLORAM_RS03315Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-215 aa · 82 aa · 35.3% of protein
Raw token
LytTR:134:3.58e-19:215:88:98- Raw architecture: Response_reg:5:0.000000000373:107:107:111#LytTR:134:3.58e-19:215:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154485::NZ_DS499654.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span402611-403309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00686RefSeq proteinWP_003535552.1
Context group ID
GCF_000154485::NZ_DS499654.1::G00023Context members
CLORAM_RS03315
Partner locus tags
CLORAM_RS03315
Partner old locus tags
CLORAM_00686
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535552.1Primary protein accession used for annex mappings.
UniProt accessionB0N250Primary UniProt accession resolved in the annex database.
UniProt IDB0N250_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS03315Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00686Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499654.1Sequence record reported by the local genomic context database.
Genomic interval402 611-403 309 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span402 611-403 309 ntGCF_000154485::NZ_DS499654.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499654.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499654.1All displayed genes belong to this local TCS context.
Neighborhood span402 611-403 309 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
402 611 nt403 309 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLORAM_RS03315GCF_000154485#CLORAM_RS03315
RRLytTRCurrent focus
402 611-403 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119699
Simplified PFAM architecture for RROC_1119699
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-107] | LytTR[135-216]
- Domain count: 2
- Matched identifier: RROC_1119699
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; LytTR 135-216 ; LytTR 135-216
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03315
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 86 total members. Page 1 / 2.
GCF_000154485#CLORAM_RS03315 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key