1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:4.86e-27:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS02060
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154485#CLORAM_RS02060Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:147:9.12e-30:221:75:77- Raw architecture: Response_reg:4:4.86e-27:112:111:111#Trans_reg_C:147:9.12e-30:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154485::NZ_DS499654.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span125826-126497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00428RefSeq proteinWP_003535101.1
Context group ID
GCF_000154485::NZ_DS499654.1::G00019Context members
CLORAM_RS02060
Partner locus tags
CLORAM_RS02060
Partner old locus tags
CLORAM_00428
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535101.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35IEE0Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35IEE0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS02060Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00428Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499654.1Sequence record reported by the local genomic context database.
Genomic interval125 826-126 497 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 826-126 497 ntGCF_000154485::NZ_DS499654.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499654.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499654.1All displayed genes belong to this local TCS context.
Neighborhood span125 826-126 497 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 826 nt126 497 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLORAM_RS02060GCF_000154485#CLORAM_RS02060
RROmpRCurrent focus
125 826-126 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587355
Simplified PFAM architecture for RROC_1587355
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1587355
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02060
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 16 over 16 total members. Page 1 / 1.
GCF_000154485#CLORAM_RS02060 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key