1 Response_reg#1
17-117 aa · 101 aa · 40.1% of protein
Raw token
Response_reg:17:0.00000000143:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS08200
Response regulator Spo0A family
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassRRTypeSpo0ALength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154385#FAEPRAM212_RS08200Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 252 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
140-243 aa · 104 aa · 41.3% of protein
Raw token
Spo0A_C:140:6.14e-70:243:104:104- Raw architecture: Response_reg:17:0.00000000143:117:103:111#Spo0A_C:140:6.14e-70:243:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154385::NZ_DS483500.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span240233-240991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_01632RefSeq proteinWP_015538099.1
Context group ID
GCF_000154385::NZ_DS483500.1::G00013Context members
FAEPRAM212_RS08200
Partner locus tags
FAEPRAM212_RS08200
Partner old locus tags
FAEPRAM212_01632
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015538099.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AVR6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AVR6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS08200Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_01632Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483500.1Sequence record reported by the local genomic context database.
Genomic interval240 233-240 991 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span240 233-240 991 ntGCF_000154385::NZ_DS483500.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483500.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483500.1All displayed genes belong to this local TCS context.
Neighborhood span240 233-240 991 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
240 233 nt240 991 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAM212_RS08200GCF_000154385#FAEPRAM212_RS08200
RRSpo0ACurrent focus
240 233-240 991 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS08200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0703619
Simplified PFAM architecture for RROC_0703619
PFAM domain coverage: 210 / 252 aa (83.3%)
1 aa252 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[12-117] | Spo0A_C[140-243]
- Domain count: 2
- Matched identifier: RROC_0703619
- Positioned domains: Response_reg 12-117 ; Response_reg 12-117 ; Spo0A_C 140-243 ; Spo0A_C 140-243
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS08200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key