1 HAMP#1
298-365 aa · 68 aa · 11.2% of protein
Raw token
HAMP:298:0.00000000756:365:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS00160
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS00160Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 605 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:382:2.11e-29:461:80:803 HATPase_c#3
484-593 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:484:0.00000000000000265:593:110:109- Raw architecture: HAMP:298:0.00000000756:365:69:69#His_kinase:382:2.11e-29:461:80:80#HATPase_c:484:0.00000000000000265:593:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483480.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25939-28993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00919RefSeq proteinWP_005920154.1
Context group ID
GCF_000154385::NZ_DS483480.1::G00031Context members
FAEPRAM212_RS00155FAEPRAM212_RS00160
Partner locus tags
FAEPRAM212_RS00155FAEPRAM212_RS00160
Partner old locus tags
FAEPRAM212_00918FAEPRAM212_00919
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005920154.1Primary protein accession used for annex mappings.
UniProt accessionA8S8Z5Primary UniProt accession resolved in the annex database.
UniProt IDA8S8Z5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS00160Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00919Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483480.1Sequence record reported by the local genomic context database.
Genomic interval27 176-28 993 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 939-28 993 ntGCF_000154385::NZ_DS483480.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483480.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483480.1All displayed genes belong to this local TCS context.
Neighborhood span25 939-28 993 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 939 nt28 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS00155GCF_000154385#FAEPRAM212_RS00155
RRunclassified
25 939-27 201 nt · Reverse (-)
FAEPRAM212_RS00160GCF_000154385#FAEPRAM212_RS00160
HKClassicCurrent focus
27 176-28 993 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS00160The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028386
Simplified PFAM architecture for HKOC_1028386
PFAM domain coverage: 238 / 605 aa (39.3%)
1 aa605 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[315-365] | His_kinase[383-460] | HATPase_c[484-592]
- Domain count: 3
- Matched identifier: HKOC_1028386
- Positioned domains: HAMP 315-365 ; His_kinase 383-460 ; HATPase_c 484-592
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS00160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key