1 HAMP#1
189-258 aa · 70 aa · 14.1% of protein
Raw token
HAMP:189:0.00000000000000429:258:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS05135
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS05135Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 495 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
283-362 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:283:6.11e-34:362:80:803 HATPase_c#3
382-485 aa · 104 aa · 21.0% of protein
Raw token
HATPase_c:382:1.07e-16:485:106:109- Raw architecture: HAMP:189:0.00000000000000429:258:70:69#His_kinase:283:6.11e-34:362:80:80#HATPase_c:382:1.07e-16:485:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483496.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44240-46515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00827RefSeq proteinWP_044960090.1
Context group ID
GCF_000154385::NZ_DS483496.1::G00019Context members
FAEPRAM212_RS05135FAEPRAM212_RS05140
Partner locus tags
FAEPRAM212_RS05135FAEPRAM212_RS05140
Partner old locus tags
FAEPRAM212_00827FAEPRAM212_00828
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044960090.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A395Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A395_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS05135Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00827Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483496.1Sequence record reported by the local genomic context database.
Genomic interval44 240-45 727 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 240-46 515 ntGCF_000154385::NZ_DS483496.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483496.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483496.1All displayed genes belong to this local TCS context.
Neighborhood span44 240-46 515 nt2 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 240 nt46 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS05135GCF_000154385#FAEPRAM212_RS05135
HKClassicCurrent focus
44 240-45 727 nt · Forward (+)
FAEPRAM212_RS05140GCF_000154385#FAEPRAM212_RS05140
RRunclassified
45 724-46 515 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS05135The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504289
Simplified PFAM architecture for HKOC_1504289
PFAM domain coverage: 232 / 495 aa (46.9%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[205-255] | His_kinase[284-361] | HATPase_c[382-484]
- Domain count: 3
- Matched identifier: HKOC_1504289
- Positioned domains: HAMP 205-255 ; His_kinase 284-361 ; HATPase_c 382-484
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS05135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key