1 HAMP#1
205-275 aa · 71 aa · 13.9% of protein
Raw token
HAMP:205:5.77e-16:275:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS03860
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS03860Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 510 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 13.3% of protein
Raw token
HisKA:279:1.86e-16:346:68:643 HATPase_c#3
392-498 aa · 107 aa · 21.0% of protein
Raw token
HATPase_c:392:3.34e-26:498:107:109- Raw architecture: HAMP:205:5.77e-16:275:71:69#HisKA:279:1.86e-16:346:68:64#HATPase_c:392:3.34e-26:498:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483493.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47960-50198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00406RefSeq proteinWP_005921943.1
Context group ID
GCF_000154385::NZ_DS483493.1::G00026Context members
FAEPRAM212_RS03855FAEPRAM212_RS03860
Partner locus tags
FAEPRAM212_RS03855FAEPRAM212_RS03860
Partner old locus tags
FAEPRAM212_00405FAEPRAM212_00406
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005921943.1Primary protein accession used for annex mappings.
UniProt accessionA8S749Primary UniProt accession resolved in the annex database.
UniProt IDA8S749_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS03860Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00406Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483493.1Sequence record reported by the local genomic context database.
Genomic interval48 666-50 198 nt1 533 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 960-50 198 ntGCF_000154385::NZ_DS483493.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483493.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483493.1All displayed genes belong to this local TCS context.
Neighborhood span47 960-50 198 nt2 239 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 960 nt50 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS03855GCF_000154385#FAEPRAM212_RS03855
RROmpR
47 960-48 646 nt · Forward (+)
FAEPRAM212_RS03860GCF_000154385#FAEPRAM212_RS03860
HKClassicCurrent focus
48 666-50 198 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS03860The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1428069
Simplified PFAM architecture for HKOC_1428069
PFAM domain coverage: 221 / 510 aa (43.3%)
1 aa510 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[227-274] | HisKA[280-346] | HATPase_c[393-498]
- Domain count: 3
- Matched identifier: HKOC_1428069
- Positioned domains: HAMP 227-274 ; HisKA 280-346 ; HATPase_c 393-498
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS03860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key