Gene detail

FTCG_RS01250

Histidine kinase, Classic

Francisella tularensis subsp. novicida GA99-3549 · GCF_000154185

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000154185#FTCG_RS01250Stable P2CS identifier used across views.

GenomeGCF_000154185Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_2866071Run 6 · 13 sequences · id 100% · cov 80% · representative

External referencesWP_004339186.1 · MIST4 FTCG_RS01250RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length323 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage163 / 323 aa (50.5%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.

Biotite-like domain view for FTCG_RS01250

Domain-by-domain annotation2 items

1 HisKA#1

116-170 aa · 55 aa · 17.0% of protein

Raw tokenHisKA:116:0.000000223:170:57:64

2 HATPase_c#2

215-322 aa · 108 aa · 33.4% of protein

Raw tokenHATPase_c:215:7.97e-24:322:108:109

Raw architecture: HisKA:116:0.000000223:170:57:64#HATPase_c:215:7.97e-24:322:108:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000154185::NZ_DS264129.1::G00003

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span166420-168130Genomic interval covered by the local TCS group.

Identifiers

Old locus tagFTCG_00969RefSeq proteinWP_004339186.1

Context group IDGCF_000154185::NZ_DS264129.1::G00003

Context members

FTCG_RS01255FTCG_RS01250

Partner locus tags

FTCG_RS01255FTCG_RS01250

Partner old locus tags

FTCG_00968FTCG_00969

Partner protein IDs

WP_003022431.1 WP_004339186.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_004339186.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFTCG_RS01250Primary locus identifier stored in the genes table.

Old locus tagFTCG_00969Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_DS264129.1Sequence record reported by the local genomic context database.

Genomic interval167 159-168 130 nt972 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span166 420-168 130 ntGCF_000154185::NZ_DS264129.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000154185::NZ_DS264129.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_DS264129.1All displayed genes belong to this local TCS context.

Neighborhood span166 420-168 130 nt1 711 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

166 420 nt168 130 nt

+-FTCG_RS01255 FTCG_RS01250

Neighborhood gene cards

2 genes in the current local neighborhood.

FTCG_RS01255GCF_000154185#FTCG_RS01255

RROmpR

166 420-167 109 nt · Forward (+)

Old locus FTCG_00968RefSeq WP_003022431.1

Open gene

FTCG_RS01250GCF_000154185#FTCG_RS01250

HKClassicCurrent focus

167 159-168 130 nt · Forward (+)

Old locus FTCG_00969RefSeq WP_004339186.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2866071HK

Run 613 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2866071Run 6 · HK · 13 sequences

Representative sequenceGCF_000154185#FTCG_RS01250The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2866071

Simplified PFAM architecture for HKOC_2866071

PFAM domain coverage: 164 / 323 aa (50.8%)

1 aa323 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[115-170] | HATPase_c[215-322]
Domain count: 2
Matched identifier: HKOC_2866071
Positioned domains: HisKA 115-170 ; HATPase_c 215-322

Cluster members and taxonomy

Representative gene: GCF_000154185#FTCG_RS01250

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 430 558 · GCF_000154185

AssemblyASM15418v1 · Scaffoldhaploid

Genome composition1 901 304 bp · 32,0% GCFrancisella tularensis subsp. novicida GA99-3549

Signal transduction countsGenes 7 · HK 3 · RR 4CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

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Preview from the same derived genome key