1 Response_reg#1
4-113 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:4:9.6e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FTCG_RS01035
Response regulator OmpR family
Francisella tularensis subsp. novicida GA99-3549 · GCF_000154185
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154185#FTCG_RS01035Stable P2CS identifier used across views.
GenomeGCF_000154185Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 241 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 29.0% of protein
Raw token
Trans_reg_C:150:0.0000000000000101:219:72:77- Raw architecture: Response_reg:4:9.6e-35:113:111:111#Trans_reg_C:150:0.0000000000000101:219:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154185::NZ_DS264129.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span221031-221756Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFTCG_01015RefSeq proteinWP_003034881.1
Context group ID
GCF_000154185::NZ_DS264129.1::G00005Context members
FTCG_RS01035
Partner locus tags
FTCG_RS01035
Partner old locus tags
FTCG_01015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003034881.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFTCG_RS01035Primary locus identifier stored in the genes table.
Old locus tagFTCG_01015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264129.1Sequence record reported by the local genomic context database.
Genomic interval221 031-221 756 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span221 031-221 756 ntGCF_000154185::NZ_DS264129.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154185::NZ_DS264129.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264129.1All displayed genes belong to this local TCS context.
Neighborhood span221 031-221 756 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 031 nt221 756 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FTCG_RS01035GCF_000154185#FTCG_RS01035
RROmpRCurrent focus
221 031-221 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154185#FTCG_RS01035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862773
Simplified PFAM architecture for RROC_0862773
PFAM domain coverage: 181 / 241 aa (75.1%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_0862773
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000154185#FTCG_RS01035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 430 558 · GCF_000154185
AssemblyASM15418v1 · Scaffoldhaploid
Genome composition1 901 304 bp · 32,0% GCFrancisella tularensis subsp. novicida GA99-3549
Signal transduction countsGenes 7 · HK 3 · RR 4CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key