1 Response_reg#1
11-120 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:11:3.26e-35:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMTOR_RS10470
Response regulator OmpR family
[Ruminococcus] torques ATCC 27756 · GCF_000153925
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153925#RUMTOR_RS10470Stable P2CS identifier used across views.
GenomeGCF_000153925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-236 aa · 78 aa · 32.6% of protein
Raw token
Trans_reg_C:159:4.79e-32:236:78:77- Raw architecture: Response_reg:11:3.26e-35:120:111:111#Trans_reg_C:159:4.79e-32:236:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153925::NZ_DS264369.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7839-9831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMTOR_02636RefSeq proteinWP_009242409.1
Context group ID
GCF_000153925::NZ_DS264369.1::G00006Context members
RUMTOR_RS10470RUMTOR_RS10475
Partner locus tags
RUMTOR_RS10470RUMTOR_RS10475
Partner old locus tags
RUMTOR_02636RUMTOR_02637
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242409.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XEQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XEQ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMTOR_RS10470Primary locus identifier stored in the genes table.
Old locus tagRUMTOR_02636Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264369.1Sequence record reported by the local genomic context database.
Genomic interval7 839-8 558 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 839-9 831 ntGCF_000153925::NZ_DS264369.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153925::NZ_DS264369.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264369.1All displayed genes belong to this local TCS context.
Neighborhood span7 839-9 831 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 839 nt9 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMTOR_RS10470GCF_000153925#RUMTOR_RS10470
RROmpRCurrent focus
7 839-8 558 nt · Forward (+)
RUMTOR_RS10475GCF_000153925#RUMTOR_RS10475
HKClassic
8 533-9 831 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS10470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905597
Simplified PFAM architecture for RROC_0905597
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[159-236]
- Domain count: 2
- Matched identifier: RROC_0905597
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 159-236 ; Trans_reg_C 159-236
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS10470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 460 · GCF_000153925
AssemblyASM15392v1 · Scaffoldhaploid
Genome composition2 741 706 bp · 42,0% GC[Ruminococcus] torques ATCC 27756
Signal transduction countsGenes 44 · HK 20 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key