1 Response_reg#1
7-116 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:7:4.82e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMTOR_RS03790
Response regulator OmpR family
[Ruminococcus] torques ATCC 27756 · GCF_000153925
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000153925#RUMTOR_RS03790Stable P2CS identifier used across views.
GenomeGCF_000153925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 230 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-228 aa · 72 aa · 31.3% of protein
Raw token
Trans_reg_C:157:2.53e-28:228:73:77- Raw architecture: Response_reg:7:4.82e-35:116:111:111#Trans_reg_C:157:2.53e-28:228:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000153925::NZ_DS264345.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span535586-536278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMTOR_00598RefSeq proteinWP_009242222.1
Context group ID
GCF_000153925::NZ_DS264345.1::G00022Context members
RUMTOR_RS03790
Partner locus tags
RUMTOR_RS03790
Partner old locus tags
RUMTOR_00598
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242222.1Primary protein accession used for annex mappings.
UniProt accessionR5R074Primary UniProt accession resolved in the annex database.
UniProt IDR5R074_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMTOR_RS03790Primary locus identifier stored in the genes table.
Old locus tagRUMTOR_00598Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264345.1Sequence record reported by the local genomic context database.
Genomic interval535 586-536 278 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span535 586-536 278 ntGCF_000153925::NZ_DS264345.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153925::NZ_DS264345.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264345.1All displayed genes belong to this local TCS context.
Neighborhood span535 586-536 278 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
535 586 nt536 278 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RUMTOR_RS03790GCF_000153925#RUMTOR_RS03790
RROmpRCurrent focus
535 586-536 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS03790The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200116
Simplified PFAM architecture for RROC_1200116
PFAM domain coverage: 181 / 230 aa (78.7%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[157-228]
- Domain count: 2
- Matched identifier: RROC_1200116
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 157-228 ; Trans_reg_C 157-228
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS03790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 460 · GCF_000153925
AssemblyASM15392v1 · Scaffoldhaploid
Genome composition2 741 706 bp · 42,0% GC[Ruminococcus] torques ATCC 27756
Signal transduction countsGenes 44 · HK 20 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key