1 Response_reg#1
4-113 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:4:0.00000000000177:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBVEN_RS03000
Response regulator LytTR family
Eubacterium ventriosum ATCC 27560 · GCF_000153885
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000153885#EUBVEN_RS03000Stable P2CS identifier used across views.
GenomeGCF_000153885Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 244 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-234 aa · 89 aa · 36.5% of protein
Raw token
LytTR:146:0.000000000000102:234:94:98- Raw architecture: Response_reg:4:0.00000000000177:113:112:111#LytTR:146:0.000000000000102:234:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000153885::NZ_DS264269.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44319-45053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBVEN_01135RefSeq proteinWP_005359849.1
Context group ID
GCF_000153885::NZ_DS264269.1::G00030Context members
EUBVEN_RS03000
Partner locus tags
EUBVEN_RS03000
Partner old locus tags
EUBVEN_01135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005359849.1Primary protein accession used for annex mappings.
UniProt accessionA5Z603Primary UniProt accession resolved in the annex database.
UniProt IDA5Z603_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBVEN_RS03000Primary locus identifier stored in the genes table.
Old locus tagEUBVEN_01135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264269.1Sequence record reported by the local genomic context database.
Genomic interval44 319-45 053 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 319-45 053 ntGCF_000153885::NZ_DS264269.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153885::NZ_DS264269.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264269.1All displayed genes belong to this local TCS context.
Neighborhood span44 319-45 053 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 319 nt45 053 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBVEN_RS03000GCF_000153885#EUBVEN_RS03000
RRLytTRCurrent focus
44 319-45 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS03000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806089
Simplified PFAM architecture for RROC_0806089
PFAM domain coverage: 205 / 244 aa (84.0%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[141-234]
- Domain count: 2
- Matched identifier: RROC_0806089
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 141-234 ; LytTR 141-234
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS03000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 463 · GCF_000153885
AssemblyASM15388v1 · Scaffoldhaploid
Genome composition2 870 795 bp · 35,0% GCEubacterium ventriosum ATCC 27560
Signal transduction countsGenes 58 · HK 26 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key