1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000646:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBVEN_RS01605
Histidine kinase, Classic
Eubacterium ventriosum ATCC 27560 · GCF_000153885
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153885#EUBVEN_RS01605Stable P2CS identifier used across views.
GenomeGCF_000153885Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000255:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:2.15e-17:451:106:109- Raw architecture: HAMP:152:0.0000646:222:71:69#HisKA:233:0.0000000000255:294:62:64#HATPase_c:346:2.15e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153885::NZ_DS264265.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275458-277484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBVEN_02138RefSeq proteinWP_005359224.1
Context group ID
GCF_000153885::NZ_DS264265.1::G00034Context members
EUBVEN_RS01605EUBVEN_RS01610
Partner locus tags
EUBVEN_RS01605EUBVEN_RS01610
Partner old locus tags
EUBVEN_02138EUBVEN_02139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005359224.1Primary protein accession used for annex mappings.
UniProt accessionA5Z8U6Primary UniProt accession resolved in the annex database.
UniProt IDA5Z8U6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBVEN_RS01605Primary locus identifier stored in the genes table.
Old locus tagEUBVEN_02138Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264265.1Sequence record reported by the local genomic context database.
Genomic interval275 458-276 834 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span275 458-277 484 ntGCF_000153885::NZ_DS264265.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153885::NZ_DS264265.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264265.1All displayed genes belong to this local TCS context.
Neighborhood span275 458-277 484 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 458 nt277 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBVEN_RS01605GCF_000153885#EUBVEN_RS01605
HKClassicCurrent focus
275 458-276 834 nt · Reverse (-)
EUBVEN_RS01610GCF_000153885#EUBVEN_RS01610
RROmpR
276 822-277 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS01605The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858383
Simplified PFAM architecture for HKOC_1858383
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1858383
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS01605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 463 · GCF_000153885
AssemblyASM15388v1 · Scaffoldhaploid
Genome composition2 870 795 bp · 35,0% GCEubacterium ventriosum ATCC 27560
Signal transduction countsGenes 58 · HK 26 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key