1 Response_reg#1
8-109 aa · 102 aa · 44.9% of protein
Raw token
Response_reg:8:1.29e-27:109:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBVEN_RS00675
Response regulator OmpR family
Eubacterium ventriosum ATCC 27560 · GCF_000153885
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153885#EUBVEN_RS00675Stable P2CS identifier used across views.
GenomeGCF_000153885Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 227 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.6% of protein
Raw token
Trans_reg_C:151:1.05e-25:224:77:77- Raw architecture: Response_reg:8:1.29e-27:109:103:111#Trans_reg_C:151:1.05e-25:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153885::NZ_DS264265.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40729-42843Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBVEN_01930RefSeq proteinWP_005358743.1
Context group ID
GCF_000153885::NZ_DS264265.1::G00031Context members
EUBVEN_RS00670EUBVEN_RS00675
Partner locus tags
EUBVEN_RS00670EUBVEN_RS00675
Partner old locus tags
EUBVEN_01929EUBVEN_01930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005358743.1Primary protein accession used for annex mappings.
UniProt accessionA5Z890Primary UniProt accession resolved in the annex database.
UniProt IDA5Z890_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBVEN_RS00675Primary locus identifier stored in the genes table.
Old locus tagEUBVEN_01930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264265.1Sequence record reported by the local genomic context database.
Genomic interval42 160-42 843 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 729-42 843 ntGCF_000153885::NZ_DS264265.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153885::NZ_DS264265.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264265.1All displayed genes belong to this local TCS context.
Neighborhood span40 729-42 843 nt2 115 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 729 nt42 843 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBVEN_RS00670GCF_000153885#EUBVEN_RS00670
HKClassic
40 729-42 159 nt · Reverse (-)
EUBVEN_RS00675GCF_000153885#EUBVEN_RS00675
RROmpRCurrent focus
42 160-42 843 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS00675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354464
Simplified PFAM architecture for RROC_1354464
PFAM domain coverage: 180 / 227 aa (79.3%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-115] | Trans_reg_C[153-224]
- Domain count: 2
- Matched identifier: RROC_1354464
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; Trans_reg_C 153-224 ; Trans_reg_C 153-224
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS00675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 463 · GCF_000153885
AssemblyASM15388v1 · Scaffoldhaploid
Genome composition2 870 795 bp · 35,0% GCEubacterium ventriosum ATCC 27560
Signal transduction countsGenes 58 · HK 26 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key