1 Response_reg#1
3-112 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:3:3.33e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9505_RS07085
Response regulator OmpR family
Enterococcus faecalis TX0109 · GCF_000148105
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148105#HMPREF9505_RS07085Stable P2CS identifier used across views.
GenomeGCF_000148105Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:149:1.61e-30:223:75:77- Raw architecture: Response_reg:3:3.33e-35:112:111:111#Trans_reg_C:149:1.61e-30:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148105::NZ_GL455428.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27731-29805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9505_00755RefSeq proteinWP_002294790.1
Context group ID
GCF_000148105::NZ_GL455428.1::G00006Context members
HMPREF9505_RS07080HMPREF9505_RS07085
Partner locus tags
HMPREF9505_RS07080HMPREF9505_RS07085
Partner old locus tags
HMPREF9505_00754HMPREF9505_00755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002294790.1Primary protein accession used for annex mappings.
UniProt accessionF0EPY9Primary UniProt accession resolved in the annex database.
UniProt IDF0EPY9_ENTCADisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9505_RS07085Primary locus identifier stored in the genes table.
Old locus tagHMPREF9505_00755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455428.1Sequence record reported by the local genomic context database.
Genomic interval29 125-29 805 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 731-29 805 ntGCF_000148105::NZ_GL455428.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148105::NZ_GL455428.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455428.1All displayed genes belong to this local TCS context.
Neighborhood span27 731-29 805 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 731 nt29 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9505_RS07080GCF_000148105#HMPREF9505_RS07080
HKClassic
27 731-29 125 nt · Reverse (-)
HMPREF9505_RS07085GCF_000148105#HMPREF9505_RS07085
RROmpRCurrent focus
29 125-29 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148105#HMPREF9505_RS07085The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408437
Simplified PFAM architecture for RROC_1408437
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1408437
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000148105#HMPREF9505_RS07085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 502 · GCF_000148105
AssemblyASM14810v1 · Scaffoldhaploid
Genome composition2 967 295 bp · 37,5% GCEnterococcus faecalis TX0109
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key