1 HAMP#1
195-266 aa · 72 aa · 14.3% of protein
Raw token
HAMP:195:0.00000000000753:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9505_RS05605
Histidine kinase, Classic
Enterococcus faecalis TX0109 · GCF_000148105
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148105#HMPREF9505_RS05605Stable P2CS identifier used across views.
GenomeGCF_000148105Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 502 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.3% of protein
Raw token
HisKA:270:0.00000000000000867:336:67:643 HATPase_c#3
384-493 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:384:1.17e-29:493:110:109- Raw architecture: HAMP:195:0.00000000000753:266:72:69#HisKA:270:0.00000000000000867:336:67:64#HATPase_c:384:1.17e-29:493:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148105::NZ_GL455425.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34905-37110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9505_00437RefSeq proteinWP_002363430.1
Context group ID
GCF_000148105::NZ_GL455425.1::G00004Context members
HMPREF9505_RS05600HMPREF9505_RS05605
Partner locus tags
HMPREF9505_RS05600HMPREF9505_RS05605
Partner old locus tags
HMPREF9505_00436HMPREF9505_00437
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002363430.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TPB6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TPB6_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9505_RS05605Primary locus identifier stored in the genes table.
Old locus tagHMPREF9505_00437Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455425.1Sequence record reported by the local genomic context database.
Genomic interval35 602-37 110 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 905-37 110 ntGCF_000148105::NZ_GL455425.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148105::NZ_GL455425.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455425.1All displayed genes belong to this local TCS context.
Neighborhood span34 905-37 110 nt2 206 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 905 nt37 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9505_RS05600GCF_000148105#HMPREF9505_RS05600
RROmpR
34 905-35 591 nt · Forward (+)
HMPREF9505_RS05605GCF_000148105#HMPREF9505_RS05605
HKClassicCurrent focus
35 602-37 110 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000390525#Q95_RS13535Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1454241
Simplified PFAM architecture for HKOC_1454241
PFAM domain coverage: 372 / 504 aa (73.8%)
1 aa504 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-492]
- Domain count: 4
- Matched identifier: HKOC_1454241
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_000390525#Q95_RS13535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 502 · GCF_000148105
AssemblyASM14810v1 · Scaffoldhaploid
Genome composition2 967 295 bp · 37,5% GCEnterococcus faecalis TX0109
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key