1 H_kinase_N#1
9-147 aa · 139 aa · 29.1% of protein
Raw token
H_kinase_N:9:5.93e-37:147:140:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9500_RS05570
Histidine kinase, Classic
Enterococcus faecalis TX0017 · GCF_000147905
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147905#HMPREF9500_RS05570Stable P2CS identifier used across views.
GenomeGCF_000147905Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 477 aa (63.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation3 items
2 HisKA_2#2
280-354 aa · 75 aa · 15.7% of protein
Raw token
HisKA_2:280:1.23e-27:354:76:763 HATPase_c#3
380-468 aa · 89 aa · 18.7% of protein
Raw token
HATPase_c:380:0.00000000017:468:105:109- Raw architecture: H_kinase_N:9:5.93e-37:147:140:139#HisKA_2:280:1.23e-27:354:76:76#HATPase_c:380:0.00000000017:468:105:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147905::NZ_GL454154.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span378613-380619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9500_00392RefSeq proteinWP_002363989.1
Context group ID
GCF_000147905::NZ_GL454154.1::G00002Context members
HMPREF9500_RS05570HMPREF9500_RS05575
Partner locus tags
HMPREF9500_RS05570HMPREF9500_RS05575
Partner old locus tags
HMPREF9500_00392HMPREF9500_00393
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002363989.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9500_RS05570Primary locus identifier stored in the genes table.
Old locus tagHMPREF9500_00392Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454154.1Sequence record reported by the local genomic context database.
Genomic interval378 613-380 046 nt1 434 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span378 613-380 619 ntGCF_000147905::NZ_GL454154.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147905::NZ_GL454154.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454154.1All displayed genes belong to this local TCS context.
Neighborhood span378 613-380 619 nt2 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
378 613 nt380 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9500_RS05570GCF_000147905#HMPREF9500_RS05570
HKClassicCurrent focus
378 613-380 046 nt · Reverse (-)
HMPREF9500_RS05575GCF_000147905#HMPREF9500_RS05575
RRAmiR_NasR
380 047-380 619 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147905#HMPREF9500_RS05570The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645595
Simplified PFAM architecture for HKOC_1645595
PFAM domain coverage: 305 / 477 aa (63.9%)
1 aa477 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-146] | HisKA_2[280-352] | HATPase_c[380-468]
- Domain count: 3
- Matched identifier: HKOC_1645595
- Positioned domains: GAF_PdtaS 4-146 ; HisKA_2 280-352 ; HATPase_c 380-468
Cluster members and taxonomy
Representative gene: GCF_000147905#HMPREF9500_RS05570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 497 · GCF_000147905
AssemblyASM14790v1 · Scaffoldhaploid
Genome composition2 997 067 bp · 37,5% GCEnterococcus faecalis TX0017
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key