1 Response_reg#1
6-89 aa · 84 aa · 34.3% of protein
Raw token
Response_reg:6:0.0000111:89:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9503_RS09385
Response regulator LytTR family
Enterococcus faecalis TX0043 · GCF_000147515
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147515#HMPREF9503_RS09385Stable P2CS identifier used across views.
GenomeGCF_000147515Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 245 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-237 aa · 93 aa · 38.0% of protein
Raw token
LytTR:145:0.0000000296:237:96:98- Raw architecture: Response_reg:6:0.0000111:89:86:111#LytTR:145:0.0000000296:237:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147515::NZ_GL454515.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17406-18143Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9503_01271RefSeq proteinWP_002381792.1
Context group ID
GCF_000147515::NZ_GL454515.1::G00007Context members
HMPREF9503_RS09385
Partner locus tags
HMPREF9503_RS09385
Partner old locus tags
HMPREF9503_01271
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002381792.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9503_RS09385Primary locus identifier stored in the genes table.
Old locus tagHMPREF9503_01271Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454515.1Sequence record reported by the local genomic context database.
Genomic interval17 406-18 143 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 406-18 143 ntGCF_000147515::NZ_GL454515.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147515::NZ_GL454515.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454515.1All displayed genes belong to this local TCS context.
Neighborhood span17 406-18 143 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 406 nt18 143 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9503_RS09385GCF_000147515#HMPREF9503_RS09385
RRLytTRCurrent focus
17 406-18 143 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147515#HMPREF9503_RS09385The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0789443
Simplified PFAM architecture for RROC_0789443
PFAM domain coverage: 94 / 245 aa (38.4%)
1 aa245 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[146-239]
- Domain count: 1
- Matched identifier: RROC_0789443
- Positioned domains: LytTR 146-239 ; LytTR 146-239
Cluster members and taxonomy
Representative gene: GCF_000147515#HMPREF9503_RS09385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 500 · GCF_000147515
AssemblyASM14751v1 · Scaffoldhaploid
Genome composition2 812 052 bp · 37,5% GCEnterococcus faecalis TX0043
Signal transduction countsGenes 25 · HK 12 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key