1 Response_reg#1
4-117 aa · 114 aa · 23.1% of protein
Raw token
Response_reg:4:1.26e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9503_RS03820
Response regulator, unclassified
Enterococcus faecalis TX0043 · GCF_000147515
ClassRRTypeunclassifiedLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147515#HMPREF9503_RS03820Stable P2CS identifier used across views.
GenomeGCF_000147515Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 493 aa (38.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
391-432 aa · 42 aa · 8.5% of protein
Raw token
HTH_AraC:391:0.0000000166:432:42:423 HTH_AraC#3
446-481 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:446:0.00000181:481:36:42- Raw architecture: Response_reg:4:1.26e-24:117:114:111#HTH_AraC:391:0.0000000166:432:42:42#HTH_AraC:446:0.00000181:481:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147515::NZ_GL454495.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5692-8915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9503_00119RefSeq proteinWP_002381612.1
Context group ID
GCF_000147515::NZ_GL454495.1::G00003Context members
HMPREF9503_RS03815HMPREF9503_RS03820
Partner locus tags
HMPREF9503_RS03815HMPREF9503_RS03820
Partner old locus tags
HMPREF9503_00118HMPREF9503_00119
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002381612.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9503_RS03820Primary locus identifier stored in the genes table.
Old locus tagHMPREF9503_00119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454495.1Sequence record reported by the local genomic context database.
Genomic interval7 434-8 915 nt1 482 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 692-8 915 ntGCF_000147515::NZ_GL454495.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147515::NZ_GL454495.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454495.1All displayed genes belong to this local TCS context.
Neighborhood span5 692-8 915 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 692 nt8 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9503_RS03815GCF_000147515#HMPREF9503_RS03815
HKClassic
5 692-7 422 nt · Forward (+)
HMPREF9503_RS03820GCF_000147515#HMPREF9503_RS03820
RRunclassifiedCurrent focus
7 434-8 915 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147515#HMPREF9503_RS03820The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0165857
Simplified PFAM architecture for RROC_0165857
PFAM domain coverage: 192 / 493 aa (38.9%)
1 aa493 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[405-483]
- Domain count: 2
- Matched identifier: RROC_0165857
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 405-483 ; HTH_18 405-483
Cluster members and taxonomy
Representative gene: GCF_000147515#HMPREF9503_RS03820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 500 · GCF_000147515
AssemblyASM14751v1 · Scaffoldhaploid
Genome composition2 812 052 bp · 37,5% GCEnterococcus faecalis TX0043
Signal transduction countsGenes 25 · HK 12 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key