1 HisKA_3#1
155-224 aa · 70 aa · 19.7% of protein
Raw token
HisKA_3:155:5.7e-21:224:70:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9527_RS05260
Histidine kinase, Classic
Enterococcus faecium TX0133C · GCF_000147315
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147315#HMPREF9527_RS05260Stable P2CS identifier used across views.
GenomeGCF_000147315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 355 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
262-351 aa · 90 aa · 25.4% of protein
Raw token
HATPase_c:262:8.69e-18:351:105:109- Raw architecture: HisKA_3:155:5.7e-21:224:70:68#HATPase_c:262:8.69e-18:351:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147315::NZ_GL455183.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1196-2902Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9527_01135RefSeq proteinWP_002321487.1
Context group ID
GCF_000147315::NZ_GL455183.1::G00009Context members
HMPREF9527_RS05255HMPREF9527_RS05260
Partner locus tags
HMPREF9527_RS05255HMPREF9527_RS05260
Partner old locus tags
HMPREF9527_01134HMPREF9527_01135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002321487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9527_RS05260Primary locus identifier stored in the genes table.
Old locus tagHMPREF9527_01135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455183.1Sequence record reported by the local genomic context database.
Genomic interval1 835-2 902 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 196-2 902 ntGCF_000147315::NZ_GL455183.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147315::NZ_GL455183.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455183.1All displayed genes belong to this local TCS context.
Neighborhood span1 196-2 902 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 196 nt2 902 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9527_RS05255GCF_000147315#HMPREF9527_RS05255
RRNarL
1 196-1 828 nt · Reverse (-)
HMPREF9527_RS05260GCF_000147315#HMPREF9527_RS05260
HKClassicCurrent focus
1 835-2 902 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS11070Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775027
Simplified PFAM architecture for HKOC_2775027
PFAM domain coverage: 159 / 355 aa (44.8%)
1 aa355 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[155-223] | HATPase_c[262-351]
- Domain count: 2
- Matched identifier: HKOC_2775027
- Positioned domains: HisKA_3 155-223 ; HATPase_c 262-351
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 525 · GCF_000147315
AssemblyASM14731v1 · Scaffoldhaploid
Genome composition2 907 861 bp · 37,5% GCEnterococcus faecium TX0133C
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key