1 Response_reg#1
5-89 aa · 85 aa · 34.6% of protein
Raw token
Response_reg:5:0.00000096:89:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9525_RS05220
Response regulator LytTR family
Enterococcus faecium TX0133a04 · GCF_000147235
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147235#HMPREF9525_RS05220Stable P2CS identifier used across views.
GenomeGCF_000147235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 246 aa (70.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 35.8% of protein
Raw token
LytTR:141:0.00000000752:228:91:98- Raw architecture: Response_reg:5:0.00000096:89:85:111#LytTR:141:0.00000000752:228:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147235::NZ_GL454953.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2532-3272Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9525_01113RefSeq proteinWP_002306055.1
Context group ID
GCF_000147235::NZ_GL454953.1::G00007Context members
HMPREF9525_RS05220
Partner locus tags
HMPREF9525_RS05220
Partner old locus tags
HMPREF9525_01113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002306055.1Primary protein accession used for annex mappings.
UniProt accessionA0A829A4N0Primary UniProt accession resolved in the annex database.
UniProt IDA0A829A4N0_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9525_RS05220Primary locus identifier stored in the genes table.
Old locus tagHMPREF9525_01113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454953.1Sequence record reported by the local genomic context database.
Genomic interval2 532-3 272 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 532-3 272 ntGCF_000147235::NZ_GL454953.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147235::NZ_GL454953.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454953.1All displayed genes belong to this local TCS context.
Neighborhood span2 532-3 272 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 532 nt3 272 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9525_RS05220GCF_000147235#HMPREF9525_RS05220
RRLytTRCurrent focus
2 532-3 272 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS05220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769349
Simplified PFAM architecture for RROC_0769349
PFAM domain coverage: 198 / 246 aa (80.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-110] | LytTR[145-236]
- Domain count: 2
- Matched identifier: RROC_0769349
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; LytTR 145-236 ; LytTR 145-236
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS05220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 523 · GCF_000147235
AssemblyASM14723v1 · Scaffoldhaploid
Genome composition2 922 651 bp · 37,5% GCEnterococcus faecium TX0133a04
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key