1 Response_reg#1
4-112 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:4:8.03e-40:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9525_RS03515
Response regulator OmpR family
Enterococcus faecium TX0133a04 · GCF_000147235
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147235#HMPREF9525_RS03515Stable P2CS identifier used across views.
GenomeGCF_000147235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 234 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:4.18e-34:229:77:77- Raw architecture: Response_reg:4:8.03e-40:112:109:111#Trans_reg_C:153:4.18e-34:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147235::NZ_GL454935.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8917-11354Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9525_00743RefSeq proteinWP_002293705.1
Context group ID
GCF_000147235::NZ_GL454935.1::G00005Context members
HMPREF9525_RS03515HMPREF9525_RS03520
Partner locus tags
HMPREF9525_RS03515HMPREF9525_RS03520
Partner old locus tags
HMPREF9525_00743HMPREF9525_00744
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002293705.1Primary protein accession used for annex mappings.
UniProt accessionQ3XXG9Primary UniProt accession resolved in the annex database.
UniProt IDQ3XXG9_ENTFDDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9525_RS03515Primary locus identifier stored in the genes table.
Old locus tagHMPREF9525_00743Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454935.1Sequence record reported by the local genomic context database.
Genomic interval8 917-9 621 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 917-11 354 ntGCF_000147235::NZ_GL454935.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147235::NZ_GL454935.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454935.1All displayed genes belong to this local TCS context.
Neighborhood span8 917-11 354 nt2 438 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 917 nt11 354 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9525_RS03515GCF_000147235#HMPREF9525_RS03515
RROmpRCurrent focus
8 917-9 621 nt · Forward (+)
HMPREF9525_RS03520GCF_000147235#HMPREF9525_RS03520
HKClassic
9 618-11 354 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS03515The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047356
Simplified PFAM architecture for RROC_1047356
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1047356
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-229 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS03515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 523 · GCF_000147235
AssemblyASM14723v1 · Scaffoldhaploid
Genome composition2 922 651 bp · 37,5% GCEnterococcus faecium TX0133a04
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key