1 HisKA#1
119-178 aa · 60 aa · 17.6% of protein
Raw token
HisKA:119:0.0000000714:178:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9504_RS12545
Histidine kinase, Classic
Enterococcus faecalis TX0102 · GCF_000147215
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147215#HMPREF9504_RS12545Stable P2CS identifier used across views.
GenomeGCF_000147215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 341 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
223-332 aa · 110 aa · 32.3% of protein
Raw token
HATPase_c:223:3.03e-28:332:110:109- Raw architecture: HisKA:119:0.0000000714:178:62:64#HATPase_c:223:3.03e-28:332:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147215::NZ_GL455124.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127725-129438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9504_01923RefSeq proteinWP_002355810.1
Context group ID
GCF_000147215::NZ_GL455124.1::G00012Context members
HMPREF9504_RS12545HMPREF9504_RS12550
Partner locus tags
HMPREF9504_RS12545HMPREF9504_RS12550
Partner old locus tags
HMPREF9504_01923HMPREF9504_01924
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355810.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP6V779Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP6V779_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9504_RS12545Primary locus identifier stored in the genes table.
Old locus tagHMPREF9504_01923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455124.1Sequence record reported by the local genomic context database.
Genomic interval127 725-128 750 nt1 026 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 725-129 438 ntGCF_000147215::NZ_GL455124.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147215::NZ_GL455124.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455124.1All displayed genes belong to this local TCS context.
Neighborhood span127 725-129 438 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 725 nt129 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9504_RS12545GCF_000147215#HMPREF9504_RS12545
HKClassicCurrent focus
127 725-128 750 nt · Reverse (-)
HMPREF9504_RS12550GCF_000147215#HMPREF9504_RS12550
RROmpR
128 764-129 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS12545The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2833928
Simplified PFAM architecture for HKOC_2833928
PFAM domain coverage: 109 / 341 aa (32.0%)
1 aa341 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-332]
- Domain count: 1
- Matched identifier: HKOC_2833928
- Positioned domains: HATPase_c 224-332
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS12545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 501 · GCF_000147215
AssemblyASM14721v1 · Scaffoldhaploid
Genome composition2 871 527 bp · 37,5% GCEnterococcus faecalis TX0102
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key