1 sCache_like#1
36-155 aa · 120 aa · 20.3% of protein
Raw token
sCache_like:36:0.00000000028:155:121:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9504_RS06840
Histidine kinase, Classic
Enterococcus faecalis TX0102 · GCF_000147215
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147215#HMPREF9504_RS06840Stable P2CS identifier used across views.
GenomeGCF_000147215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_4HisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage395 / 591 aa (66.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 PAS_4#2
256-361 aa · 106 aa · 17.9% of protein
Raw token
PAS_4:256:0.00000000255:361:111:1103 HisKA#3
365-428 aa · 64 aa · 10.8% of protein
Raw token
HisKA:365:0.00000000000000128:428:64:644 HATPase_c#4
484-588 aa · 105 aa · 17.8% of protein
Raw token
HATPase_c:484:1.26e-31:588:105:109- Raw architecture: sCache_like:36:0.00000000028:155:121:114#PAS_4:256:0.00000000255:361:111:110#HisKA:365:0.00000000000000128:428:64:64#HATPase_c:484:1.26e-31:588:105:109
- Domain description: 1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147215::NZ_GL455104.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span224545-227027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9504_00743RefSeq proteinWP_002392419.1
Context group ID
GCF_000147215::NZ_GL455104.1::G00006Context members
HMPREF9504_RS06835HMPREF9504_RS06840
Partner locus tags
HMPREF9504_RS06835HMPREF9504_RS06840
Partner old locus tags
HMPREF9504_00742HMPREF9504_00743
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002392419.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9504_RS06840Primary locus identifier stored in the genes table.
Old locus tagHMPREF9504_00743Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455104.1Sequence record reported by the local genomic context database.
Genomic interval225 252-227 027 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span224 545-227 027 ntGCF_000147215::NZ_GL455104.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147215::NZ_GL455104.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455104.1All displayed genes belong to this local TCS context.
Neighborhood span224 545-227 027 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 545 nt227 027 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9504_RS06835GCF_000147215#HMPREF9504_RS06835
RROmpR
224 545-225 255 nt · Forward (+)
HMPREF9504_RS06840GCF_000147215#HMPREF9504_RS06840
HKClassicCurrent focus
225 252-227 027 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS06840The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1105104
Simplified PFAM architecture for HKOC_1105104
PFAM domain coverage: 276 / 591 aa (46.7%)
1 aa591 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[256-360] | HisKA[366-429] | HATPase_c[481-587]
- Domain count: 3
- Matched identifier: HKOC_1105104
- Positioned domains: PAS_4 256-360 ; HisKA 366-429 ; HATPase_c 481-587
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS06840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 501 · GCF_000147215
AssemblyASM14721v1 · Scaffoldhaploid
Genome composition2 871 527 bp · 37,5% GCEnterococcus faecalis TX0102
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key