1 Response_reg#1
4-115 aa · 112 aa · 48.7% of protein
Raw token
Response_reg:4:4.89e-25:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9504_RS03900
Response regulator, unclassified
Enterococcus faecalis TX0102 · GCF_000147215
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147215#HMPREF9504_RS03900Stable P2CS identifier used across views.
GenomeGCF_000147215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 230 aa (48.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.89e-25:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147215::NZ_GL455095.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39521-40213Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9504_00142RefSeq proteinWP_002357928.1
Context group ID
GCF_000147215::NZ_GL455095.1::G00002Context members
HMPREF9504_RS03900
Partner locus tags
HMPREF9504_RS03900
Partner old locus tags
HMPREF9504_00142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002357928.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9504_RS03900Primary locus identifier stored in the genes table.
Old locus tagHMPREF9504_00142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455095.1Sequence record reported by the local genomic context database.
Genomic interval39 521-40 213 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 521-40 213 ntGCF_000147215::NZ_GL455095.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147215::NZ_GL455095.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455095.1All displayed genes belong to this local TCS context.
Neighborhood span39 521-40 213 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 521 nt40 213 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9504_RS03900GCF_000147215#HMPREF9504_RS03900
RRunclassifiedCurrent focus
39 521-40 213 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS03900The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1200058
Simplified PFAM architecture for RROC_1200058
PFAM domain coverage: 111 / 230 aa (48.3%)
1 aa230 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_1200058
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS03900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 501 · GCF_000147215
AssemblyASM14721v1 · Scaffoldhaploid
Genome composition2 871 527 bp · 37,5% GCEnterococcus faecalis TX0102
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key