1 Response_reg#1
3-123 aa · 121 aa · 49.8% of protein
Raw token
Response_reg:3:0.0000029:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9504_RS03410
Response regulator LytTR family
Enterococcus faecalis TX0102 · GCF_000147215
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147215#HMPREF9504_RS03410Stable P2CS identifier used across views.
GenomeGCF_000147215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 243 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-241 aa · 93 aa · 38.3% of protein
Raw token
LytTR:149:1.73e-21:241:98:98- Raw architecture: Response_reg:3:0.0000029:123:121:111#LytTR:149:1.73e-21:241:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147215::NZ_GL455093.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47694-48425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9504_00045RefSeq proteinWP_078126945.1
Context group ID
GCF_000147215::NZ_GL455093.1::G00001Context members
HMPREF9504_RS03410
Partner locus tags
HMPREF9504_RS03410
Partner old locus tags
HMPREF9504_00045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078126945.1Primary protein accession used for annex mappings.
UniProt accessionA0A431H6X3Primary UniProt accession resolved in the annex database.
UniProt IDA0A431H6X3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9504_RS03410Primary locus identifier stored in the genes table.
Old locus tagHMPREF9504_00045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455093.1Sequence record reported by the local genomic context database.
Genomic interval47 694-48 425 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 694-48 425 ntGCF_000147215::NZ_GL455093.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147215::NZ_GL455093.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455093.1All displayed genes belong to this local TCS context.
Neighborhood span47 694-48 425 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 694 nt48 425 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9504_RS03410GCF_000147215#HMPREF9504_RS03410
RRLytTRCurrent focus
47 694-48 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS03410The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824775
Simplified PFAM architecture for RROC_0824775
PFAM domain coverage: 207 / 243 aa (85.2%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-121] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0824775
- Positioned domains: Response_reg 5-121 ; Response_reg 5-121 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 501 · GCF_000147215
AssemblyASM14721v1 · Scaffoldhaploid
Genome composition2 871 527 bp · 37,5% GCEnterococcus faecalis TX0102
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key