1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:4.02e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BDP_RS03980
Response regulator NarL family
Bifidobacterium dentium Bd1 · GCF_000024445
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000024445#BDP_RS03980Stable P2CS identifier used across views.
GenomeGCF_000024445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:2.13e-23:242:58:58- Raw architecture: Response_reg:9:4.02e-28:133:125:111#HTH_LUXR:185:2.13e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000024445::NC_013714.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span940484-943798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBDP_0818RefSeq proteinWP_003840710.1
Context group ID
GCF_000024445::NC_013714.1::G00009Context members
BDP_RS03980BDP_RS03985
Partner locus tags
BDP_RS03980BDP_RS03985
Partner old locus tags
BDP_0818BDP_0819
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003840710.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2RTA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2RTA9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBDP_RS03980Primary locus identifier stored in the genes table.
Old locus tagBDP_0818Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013714.1Sequence record reported by the local genomic context database.
Genomic interval940 484-941 230 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span940 484-943 798 ntGCF_000024445::NC_013714.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000024445::NC_013714.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013714.1All displayed genes belong to this local TCS context.
Neighborhood span940 484-943 798 nt3 315 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
940 484 nt943 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BDP_RS03980GCF_000024445#BDP_RS03980
RRNarLCurrent focus
940 484-941 230 nt · Reverse (-)
BDP_RS03985GCF_000024445#BDP_RS03985
HKClassic
941 261-943 798 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000024445#BDP_RS03980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743280
Simplified PFAM architecture for RROC_0743280
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0743280
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000024445#BDP_RS03980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 401 473 · GCF_000024445
AssemblyASM2444v1 · Complete Genomehaploid
Genome composition2 636 367 bp · 58,5% GCBifidobacterium dentium Bd1
Signal transduction countsGenes 37 · HK 16 · RR 19CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key