1 His_kinase#1
202-290 aa · 89 aa · 21.3% of protein
Raw token
His_kinase:202:4.82e-24:290:90:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BDP_RS01320
Histidine kinase, Classic
Bifidobacterium dentium Bd1 · GCF_000024445
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000024445#BDP_RS01320Stable P2CS identifier used across views.
GenomeGCF_000024445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 418 aa (47.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-418 aa · 111 aa · 26.6% of protein
Raw token
HATPase_c:308:2.04e-16:418:111:109- Raw architecture: His_kinase:202:4.82e-24:290:90:80#HATPase_c:308:2.04e-16:418:111:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000024445::NC_013714.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span343521-344777Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBDP_0273RefSeq proteinWP_228369736.1
Context group ID
GCF_000024445::NC_013714.1::G00003Context members
BDP_RS01320
Partner locus tags
BDP_RS01320
Partner old locus tags
BDP_0273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228369736.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBDP_RS01320Primary locus identifier stored in the genes table.
Old locus tagBDP_0273Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013714.1Sequence record reported by the local genomic context database.
Genomic interval343 521-344 777 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span343 521-344 777 ntGCF_000024445::NC_013714.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000024445::NC_013714.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013714.1All displayed genes belong to this local TCS context.
Neighborhood span343 521-344 777 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
343 521 nt344 777 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BDP_RS01320GCF_000024445#BDP_RS01320
HKClassicCurrent focus
343 521-344 777 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000024445#BDP_RS01320The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285078
Simplified PFAM architecture for HKOC_2285078
PFAM domain coverage: 191 / 418 aa (45.7%)
1 aa418 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[211-290] | HATPase_c[306-416]
- Domain count: 2
- Matched identifier: HKOC_2285078
- Positioned domains: His_kinase 211-290 ; HATPase_c 306-416
Cluster members and taxonomy
Representative gene: GCF_000024445#BDP_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 401 473 · GCF_000024445
AssemblyASM2444v1 · Complete Genomehaploid
Genome composition2 636 367 bp · 58,5% GCBifidobacterium dentium Bd1
Signal transduction countsGenes 37 · HK 16 · RR 19CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key