1 Response_reg#1
9-113 aa · 105 aa · 40.1% of protein
Raw token
Response_reg:9:0.000000000008:113:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS12025
Response regulator Spo0A family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeSpo0ALength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS12025Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 262 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-258 aa · 99 aa · 37.8% of protein
Raw token
Spo0A_C:160:3.47e-31:258:109:104- Raw architecture: Response_reg:9:0.000000000008:113:105:111#Spo0A_C:160:3.47e-31:258:109:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2550261-2551049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_2674RefSeq proteinWP_012743490.1
Context group ID
GCF_000020605::NC_012781.1::G00029Context members
EUBREC_RS12025
Partner locus tags
EUBREC_RS12025
Partner old locus tags
EUBREC_2674
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743490.1Primary protein accession used for annex mappings.
UniProt accessionC4ZGY3Primary UniProt accession resolved in the annex database.
UniProt IDC4ZGY3_AGARVDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS12025Primary locus identifier stored in the genes table.
Old locus tagEUBREC_2674Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval2 550 261-2 551 049 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 550 261-2 551 049 ntGCF_000020605::NC_012781.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span2 550 261-2 551 049 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 550 261 nt2 551 049 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS12025GCF_000020605#EUBREC_RS12025
RRSpo0ACurrent focus
2 550 261-2 551 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS12025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644106
Simplified PFAM architecture for RROC_0644106
PFAM domain coverage: 204 / 262 aa (77.9%)
1 aa262 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[9-114] | Spo0A_C[160-257]
- Domain count: 2
- Matched identifier: RROC_0644106
- Positioned domains: Response_reg 9-114 ; Response_reg 9-114 ; Spo0A_C 160-257 ; Spo0A_C 160-257
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS12025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key