1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000692:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS00410
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS00410Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000153:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:3.91e-17:451:106:109- Raw architecture: HAMP:152:0.0000692:222:71:69#HisKA:233:0.0000000000153:294:62:64#HATPase_c:346:3.91e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86577-88603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0091RefSeq proteinWP_012741017.1
Context group ID
GCF_000020605::NC_012781.1::G00002Context members
EUBREC_RS00405EUBREC_RS00410
Partner locus tags
EUBREC_RS00405EUBREC_RS00410
Partner old locus tags
EUBREC_0090EUBREC_0091
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741017.1Primary protein accession used for annex mappings.
UniProt accessionC4Z9P8Primary UniProt accession resolved in the annex database.
UniProt IDC4Z9P8_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS00410Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0091Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval87 227-88 603 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 577-88 603 ntGCF_000020605::NC_012781.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span86 577-88 603 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 577 nt88 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS00405GCF_000020605#EUBREC_RS00405
RROmpR
86 577-87 239 nt · Forward (+)
EUBREC_RS00410GCF_000020605#EUBREC_RS00410
HKClassicCurrent focus
87 227-88 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS00410The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858321
Simplified PFAM architecture for HKOC_1858321
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1858321
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS00410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key