1 Response_reg#1
4-115 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:4:4.17e-30:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS03435
Response regulator OmpR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS03435Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 232 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-227 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:150:6.55e-30:227:78:77- Raw architecture: Response_reg:4:4.17e-30:115:112:111#Trans_reg_C:150:6.55e-30:227:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span704319-706243Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0766RefSeq proteinWP_012741667.1
Context group ID
GCF_000020605::NC_012781.1::G00007Context members
EUBREC_RS03430EUBREC_RS03435
Partner locus tags
EUBREC_RS03430EUBREC_RS03435
Partner old locus tags
EUBREC_0765EUBREC_0766
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741667.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GCE5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GCE5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS03435Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0766Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval705 545-706 243 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span704 319-706 243 ntGCF_000020605::NC_012781.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span704 319-706 243 nt1 925 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
704 319 nt706 243 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS03430GCF_000020605#EUBREC_RS03430
HKClassic
704 319-705 548 nt · Reverse (-)
EUBREC_RS03435GCF_000020605#EUBREC_RS03435
RROmpRCurrent focus
705 545-706 243 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS03435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119508
Simplified PFAM architecture for RROC_1119508
PFAM domain coverage: 189 / 232 aa (81.5%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1119508
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS03435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key