1 Response_reg#1
9-121 aa · 113 aa · 87.6% of protein
Raw token
Response_reg:9:9.27e-38:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECOLC_RS09400
Response regulator, CheY family
Escherichia coli ATCC 8739 · GCF_000019385
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000019385#ECOLC_RS09400Stable P2CS identifier used across views.
GenomeGCF_000019385Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 129 aa (87.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:9.27e-38:121:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000019385::NC_010468.1::G00020
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span1947412-1948865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEcolC_1750RefSeq proteinWP_000763867.1
Context group ID
GCF_000019385::NC_010468.1::G00020Context members
ECOLC_RS09395ECOLC_RS09400
Partner locus tags
ECOLC_RS09395ECOLC_RS09400
Partner old locus tags
EcolC_1749EcolC_1750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000763867.1Primary protein accession used for annex mappings.
UniProt accessionQ0T3N8Primary UniProt accession resolved in the annex database.
UniProt IDQ0T3N8_SHIF8Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECOLC_RS09400Primary locus identifier stored in the genes table.
Old locus tagEcolC_1750Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010468.1Sequence record reported by the local genomic context database.
Genomic interval1 948 476-1 948 865 nt390 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 947 412-1 948 865 ntGCF_000019385::NC_010468.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000019385::NC_010468.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010468.1All displayed genes belong to this local TCS context.
Neighborhood span1 947 412-1 948 865 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 947 412 nt1 948 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECOLC_RS09395GCF_000019385#ECOLC_RS09395
RRCheB
1 947 412-1 948 461 nt · Forward (+)
ECOLC_RS09400GCF_000019385#ECOLC_RS09400
RRCheYCurrent focus
1 948 476-1 948 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001575615#AUQ03_RS00255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2259442
Simplified PFAM architecture for RROC_2259442
PFAM domain coverage: 112 / 142 aa (78.9%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2259442
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_001575615#AUQ03_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 481 805 · GCF_000019385
AssemblyASM1938v1 · Complete Genomehaploid
Genome composition4 746 218 bp · 51,0% GCEscherichia coli ATCC 8739
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key