1 HAMP#1
164-232 aa · 69 aa · 15.4% of protein
Raw token
HAMP:164:0.00000143:232:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECOLC_RS03565
Histidine kinase, Classic
Escherichia coli ATCC 8739 · GCF_000019385
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000019385#ECOLC_RS03565Stable P2CS identifier used across views.
GenomeGCF_000019385Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 449 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-301 aa · 64 aa · 14.3% of protein
Raw token
HisKA:238:0.00000000000519:301:64:643 HATPase_c#3
348-442 aa · 95 aa · 21.2% of protein
Raw token
HATPase_c:348:1.35e-25:442:99:109- Raw architecture: HAMP:164:0.00000143:232:70:69#HisKA:238:0.00000000000519:301:64:64#HATPase_c:348:1.35e-25:442:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000019385::NC_010468.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span722734-724739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEcolC_0671RefSeq proteinWP_000673401.1
Context group ID
GCF_000019385::NC_010468.1::G00004Context members
ECOLC_RS03565ECOLC_RS03570
Partner locus tags
ECOLC_RS03565ECOLC_RS03570
Partner old locus tags
EcolC_0671EcolC_0672
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000673401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECOLC_RS03565Primary locus identifier stored in the genes table.
Old locus tagEcolC_0671Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010468.1Sequence record reported by the local genomic context database.
Genomic interval722 734-724 083 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span722 734-724 739 ntGCF_000019385::NC_010468.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000019385::NC_010468.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010468.1All displayed genes belong to this local TCS context.
Neighborhood span722 734-724 739 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
722 734 nt724 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECOLC_RS03565GCF_000019385#ECOLC_RS03565
HKClassicCurrent focus
722 734-724 083 nt · Reverse (-)
ECOLC_RS03570GCF_000019385#ECOLC_RS03570
RROmpR
724 080-724 739 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000019385#ECOLC_RS03565The current gene is the representative for this cluster.
PFAM architecture2CSK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1973216
Simplified PFAM architecture for HKOC_1973216
PFAM domain coverage: 297 / 449 aa (66.1%)
1 aa449 aa
2CSK_NHisKAHATPase_c
- Simplified architecture: 2CSK_N + HisKA + HATPase_c
- Raw architecture: 2CSK_N[23-157] | HisKA[237-301] | HATPase_c[349-445]
- Domain count: 3
- Matched identifier: HKOC_1973216
- Positioned domains: 2CSK_N 23-157 ; HisKA 237-301 ; HATPase_c 349-445
Cluster members and taxonomy
Representative gene: GCF_000019385#ECOLC_RS03565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 481 805 · GCF_000019385
AssemblyASM1938v1 · Complete Genomehaploid
Genome composition4 746 218 bp · 51,0% GCEscherichia coli ATCC 8739
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key