1 Response_reg#1
9-121 aa · 113 aa · 87.6% of protein
Raw token
Response_reg:9:9.27e-38:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SFV_RS10795
Response regulator, CheY family
Shigella flexneri 5 str. 8401 · GCF_000013585
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000013585#SFV_RS10795Stable P2CS identifier used across views.
GenomeGCF_000013585Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 129 aa (87.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:9.27e-38:121:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000013585::NC_008258.1::G00012
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span1972792-1974245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSFV_1928RefSeq proteinWP_000763867.1
Context group ID
GCF_000013585::NC_008258.1::G00012Context members
SFV_RS10795SFV_RS10800
Partner locus tags
SFV_RS10795SFV_RS10800
Partner old locus tags
SFV_1928SFV_1929
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000763867.1Primary protein accession used for annex mappings.
UniProt accessionQ0T3N8Primary UniProt accession resolved in the annex database.
UniProt IDQ0T3N8_SHIF8Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSFV_RS10795Primary locus identifier stored in the genes table.
Old locus tagSFV_1928Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008258.1Sequence record reported by the local genomic context database.
Genomic interval1 972 792-1 973 181 nt390 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 972 792-1 974 245 ntGCF_000013585::NC_008258.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000013585::NC_008258.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008258.1All displayed genes belong to this local TCS context.
Neighborhood span1 972 792-1 974 245 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 972 792 nt1 974 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SFV_RS10795GCF_000013585#SFV_RS10795
RRCheYCurrent focus
1 972 792-1 973 181 nt · Reverse (-)
SFV_RS10800GCF_000013585#SFV_RS10800
RRCheB
1 973 196-1 974 245 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001575615#AUQ03_RS00255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2259442
Simplified PFAM architecture for RROC_2259442
PFAM domain coverage: 112 / 142 aa (78.9%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2259442
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_001575615#AUQ03_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 373 384 · GCF_000013585
AssemblyASM1358v1 · Complete Genomehaploid
Genome composition4 574 284 bp · 51,0% GCShigella flexneri 5 str. 8401
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key