1 Response_reg#1
6-118 aa · 113 aa · 55.1% of protein
Raw token
Response_reg:6:8.09e-35:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SFV_RS02750
Response regulator, unclassified
Shigella flexneri 5 str. 8401 · GCF_000013585
ClassRRTypeunclassifiedLength205 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000013585#SFV_RS02750Stable P2CS identifier used across views.
GenomeGCF_000013585Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 205 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 GerE#2
149-204 aa · 56 aa · 27.3% of protein
Raw token
GerE:149:9.17e-25:204:56:57- Raw architecture: Response_reg:6:8.09e-35:118:113:111#GerE:149:9.17e-25:204:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000013585::NC_008258.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span520945-521562Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSFV_0497RefSeq proteinWP_000805417.1
Context group ID
GCF_000013585::NC_008258.1::G00002Context members
SFV_RS02750
Partner locus tags
SFV_RS02750
Partner old locus tags
SFV_0497
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000805417.1Primary protein accession used for annex mappings.
UniProt accessionA0A4V1CUI4Primary UniProt accession resolved in the annex database.
UniProt IDA0A4V1CUI4_SHIFMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSFV_RS02750Primary locus identifier stored in the genes table.
Old locus tagSFV_0497Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008258.1Sequence record reported by the local genomic context database.
Genomic interval520 945-521 562 nt618 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span520 945-521 562 ntGCF_000013585::NC_008258.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000013585::NC_008258.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008258.1All displayed genes belong to this local TCS context.
Neighborhood span520 945-521 562 nt618 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
520 945 nt521 562 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SFV_RS02750GCF_000013585#SFV_RS02750
RRunclassifiedCurrent focus
520 945-521 562 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000013585#SFV_RS02750The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2090525
Simplified PFAM architecture for RROC_2090525
PFAM domain coverage: 169 / 205 aa (82.4%)
1 aa205 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_2090525
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000013585#SFV_RS02750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 373 384 · GCF_000013585
AssemblyASM1358v1 · Complete Genomehaploid
Genome composition4 574 284 bp · 51,0% GCShigella flexneri 5 str. 8401
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key